The new version of handbrake took the program in a new direction, and left my old settings behind. My first attempts at using the new version had less than stellar results. After a lot of trial and error, I think I have landed upon settings for 0.94 that mirror my settings for 0.93. These are not really scientific, and stills don’t really represent it very well. The frames are almost, but not quite the same frame from the move. Hopefully close enough to make some comparison
The 0.93 file and the 0.94 file from the iPod preset are almost exactly the same size. The 0.94 file from the Apple TV preset is actually smaller, but I cannot use it on my iPod.
To my eye, the 0.94 iPod base settings are just a bit sharper. I watched through this clip from Transformers, looking for artifacts and noticeable compression. The light and dark with smoke and explosions did reveal some compression in all versions. But all were within acceptable ranges, especially at actual resolution. The Apple TV base setting actually showed a little bit more compression than the others.
For the time being, it looks like I will switch to 0.94 with my new altered iPod preset for future rips.